Loop J5_1YHQ

3D structure

PDB id: 1YHQ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal Structure Of Azithromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å

Loop

Sequence: CAAAGACC*GGAUAACAG*CCUCGAUGU*G(UR3)U(PSU)AG*CGGCUG
Length: 38 nucleotides
Bulged bases: 1YHQ|1|0|A|2103, 1YHQ|1|0|A|2483, 1YHQ|1|0|U|2539, 1YHQ|1|0|C|2644, 1YHQ|1|0|U|2645
QA status: Modified nucleotides: UR3, PSU

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1YHQ|1|0|C|2098
1YHQ|1|0|A|2099
1YHQ|1|0|A|2100
1YHQ|1|0|A|2101
1YHQ|1|0|G|2102
1YHQ|1|0|A|2103
1YHQ|1|0|C|2104
1YHQ|1|0|C|2105
*
1YHQ|1|0|G|2481
1YHQ|1|0|G|2482
1YHQ|1|0|A|2483
1YHQ|1|0|U|2484
1YHQ|1|0|A|2485
1YHQ|1|0|A|2486
1YHQ|1|0|C|2487
1YHQ|1|0|A|2488
1YHQ|1|0|G|2489
*
1YHQ|1|0|C|2533
1YHQ|1|0|C|2534
1YHQ|1|0|U|2535
1YHQ|1|0|C|2536
1YHQ|1|0|G|2537
1YHQ|1|0|A|2538
1YHQ|1|0|U|2539
1YHQ|1|0|G|2540
1YHQ|1|0|U|2541
*
1YHQ|1|0|G|2618
1YHQ|1|0|UR3|2619
1YHQ|1|0|U|2620
1YHQ|1|0|PSU|2621
1YHQ|1|0|A|2622
1YHQ|1|0|G|2623
*
1YHQ|1|0|C|2641
1YHQ|1|0|G|2642
1YHQ|1|0|G|2643
1YHQ|1|0|C|2644
1YHQ|1|0|U|2645
1YHQ|1|0|G|2646

Current chains

Chain 0: 23S Ribosomal RNA

Nearby chains

Chain A: 50S ribosomal protein L2P
Chain B: 50S ribosomal protein L3P
Chain C: 50S ribosomal protein L4E
Chain L: 50S ribosomal protein L15P
Chain R: 50S ribosomal protein L22P

J5_1YHQ_007