J5_1YJ9_007

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAGACC*GGAUAACAG*CCUCGAUGU*G(UR3)U(PSU)AG*CGGCUG

Length

38 nucleotides

Bulged bases

1YJ9|1|0|A|2483, 1YJ9|1|0|C|2644, 1YJ9|1|0|U|2645

QA status

Modified nucleotides: UR3, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1YJ9|1|0|C|2098
1YJ9|1|0|G|2099
1YJ9|1|0|A|2100
1YJ9|1|0|A|2101
1YJ9|1|0|G|2102
1YJ9|1|0|A|2103
1YJ9|1|0|C|2104
1YJ9|1|0|C|2105
*
1YJ9|1|0|G|2481
1YJ9|1|0|G|2482
1YJ9|1|0|A|2483
1YJ9|1|0|U|2484
1YJ9|1|0|A|2485
1YJ9|1|0|A|2486
1YJ9|1|0|C|2487
1YJ9|1|0|A|2488
1YJ9|1|0|G|2489
*
1YJ9|1|0|C|2533
1YJ9|1|0|C|2534
1YJ9|1|0|U|2535
1YJ9|1|0|C|2536
1YJ9|1|0|G|2537
1YJ9|1|0|A|2538
1YJ9|1|0|U|2539
1YJ9|1|0|G|2540
1YJ9|1|0|U|2541
*
1YJ9|1|0|G|2618
1YJ9|1|0|UR3|2619
1YJ9|1|0|U|2620
1YJ9|1|0|PSU|2621
1YJ9|1|0|A|2622
1YJ9|1|0|G|2623
*
1YJ9|1|0|C|2641
1YJ9|1|0|G|2642
1YJ9|1|0|G|2643
1YJ9|1|0|C|2644
1YJ9|1|0|U|2645
1YJ9|1|0|G|2646

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain B

50S ribosomal protein L3P

Chain C

50S ribosomal protein L4E

Chain L

50S ribosomal protein L15P