J5_22TU_004
3D structure
- PDB id
- 22TU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome in complex with DHX29
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 22TU|1|L5|A|3908, 22TU|1|L5|A|4394, 22TU|1|L5|G|4451, 22TU|1|L5|U|4452, 22TU|1|L5|U|4555, 22TU|1|L5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
22TU|1|L5|A|3903
22TU|1|L5|G|3904
22TU|1|L5|A|3905
22TU|1|L5|A|3906
22TU|1|L5|G|3907
22TU|1|L5|A|3908
22TU|1|L5|C|3909
22TU|1|L5|C|3910
*
22TU|1|L5|G|4392
22TU|1|L5|G|4393
22TU|1|L5|A|4394
22TU|1|L5|U|4395
22TU|1|L5|A|4396
22TU|1|L5|A|4397
22TU|1|L5|C|4398
22TU|1|L5|U|4399
22TU|1|L5|G|4400
*
22TU|1|L5|C|4444
22TU|1|L5|U|4445
22TU|1|L5|U|4446
22TU|1|L5|C|4447
22TU|1|L5|G|4448
22TU|1|L5|A|4449
22TU|1|L5|U|4450
22TU|1|L5|G|4451
22TU|1|L5|U|4452
22TU|1|L5|C|4453
*
22TU|1|L5|G|4528
22TU|1|L5|G|4529
22TU|1|L5|U|4530
22TU|1|L5|U|4531
22TU|1|L5|U|4532
22TU|1|L5|A|4533
22TU|1|L5|G|4534
*
22TU|1|L5|U|4552
22TU|1|L5|A|4553
22TU|1|L5|G|4554
22TU|1|L5|U|4555
22TU|1|L5|U|4556
22TU|1|L5|U|4557
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain B4
- Transfer RNA; tRNA
- Chain LA
- 60S ribosomal protein L8
- Chain LB
- 60S ribosomal protein L3
- Chain LC
- 60S ribosomal protein L4
- Chain LI
- Large ribosomal subunit protein uL16
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- 60S ribosomal protein L29
- Chain zx
- nascent peptide
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