J5_22TU_009

3D structure

PDB id

22TU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with DHX29

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCUC*GGG*UG*CCG*CG

Length

15 nucleotides

Bulged bases

22TU|1|S2|G|126, 22TU|1|S2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

22TU|1|S2|C|125
22TU|1|S2|G|126
22TU|1|S2|C|127
22TU|1|S2|U|128
22TU|1|S2|C|129
*
22TU|1|S2|G|183
22TU|1|S2|G|184
22TU|1|S2|G|185
*
22TU|1|S2|U|214
22TU|1|S2|G|215
*
22TU|1|S2|C|310
22TU|1|S2|C|311
22TU|1|S2|G|312
*
22TU|1|S2|C|337
22TU|1|S2|G|338

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8