J5_28UK_001

3D structure

PDB id

28UK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28UK|1|A|C|36
28UK|1|A|U|37
28UK|1|A|G|38
28UK|1|A|G|39
*
28UK|1|A|C|403
28UK|1|A|G|404
28UK|1|A|U|405
28UK|1|A|G|406
*
28UK|1|A|C|436
28UK|1|A|U|437
28UK|1|A|U|438
28UK|1|A|U|439
28UK|1|A|C|440
*
28UK|1|A|G|497
28UK|1|A|A|498
28UK|1|A|A|499
28UK|1|A|G|500
*
28UK|1|A|C|545
28UK|1|A|A|546
28UK|1|A|A|547
28UK|1|A|G|548

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain L

Small ribosomal subunit protein uS12