J5_28UM_001

3D structure

PDB id

28UM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28UM|1|A|C|36
28UM|1|A|U|37
28UM|1|A|G|38
28UM|1|A|G|39
*
28UM|1|A|C|403
28UM|1|A|G|404
28UM|1|A|U|405
28UM|1|A|G|406
*
28UM|1|A|C|436
28UM|1|A|U|437
28UM|1|A|U|438
28UM|1|A|U|439
28UM|1|A|C|440
*
28UM|1|A|G|497
28UM|1|A|A|498
28UM|1|A|A|499
28UM|1|A|G|500
*
28UM|1|A|C|545
28UM|1|A|A|546
28UM|1|A|A|547
28UM|1|A|G|548

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain L

Small ribosomal subunit protein uS12