J5_28ZV_001
3D structure
- PDB id
- 28ZV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 48S PIC with mRNA (non-Kozak)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUG(PSU)C(PSU)*AAAAAUAAC*GGAAUG*CCAU*AUA(OMG)
- Length
- 30 nucleotides
- Bulged bases
- 28ZV|1|S2|C|593
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
28ZV|1|S2|C|30
28ZV|1|S2|U|31
28ZV|1|S2|U|32
28ZV|1|S2|G|33
28ZV|1|S2|PSU|34
28ZV|1|S2|C|35
28ZV|1|S2|PSU|36
*
28ZV|1|S2|A|519
28ZV|1|S2|A|520
28ZV|1|S2|A|521
28ZV|1|S2|A|522
28ZV|1|S2|A|523
28ZV|1|S2|U|524
28ZV|1|S2|A|525
28ZV|1|S2|A|526
28ZV|1|S2|C|527
*
28ZV|1|S2|G|558
28ZV|1|S2|G|559
28ZV|1|S2|A|560
28ZV|1|S2|A|561
28ZV|1|S2|U|562
28ZV|1|S2|G|563
*
28ZV|1|S2|C|592
28ZV|1|S2|C|593
28ZV|1|S2|A|594
28ZV|1|S2|U|595
*
28ZV|1|S2|A|641
28ZV|1|S2|U|642
28ZV|1|S2|A|643
28ZV|1|S2|OMG|644
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
Coloring options: