J5_28ZY_002
3D structure
- PDB id
- 28ZY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 48S PIC with mRNA (Kozak_2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUUG(PSU)*AAAUAAC*GGAAUGAG*CGAGG(A2M)UCCAU*AUA(OMG)
- Length
- 35 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
28ZY|1|S2|C|30
28ZY|1|S2|U|31
28ZY|1|S2|U|32
28ZY|1|S2|G|33
28ZY|1|S2|PSU|34
*
28ZY|1|S2|A|521
28ZY|1|S2|A|522
28ZY|1|S2|A|523
28ZY|1|S2|U|524
28ZY|1|S2|A|525
28ZY|1|S2|A|526
28ZY|1|S2|C|527
*
28ZY|1|S2|G|558
28ZY|1|S2|G|559
28ZY|1|S2|A|560
28ZY|1|S2|A|561
28ZY|1|S2|U|562
28ZY|1|S2|G|563
28ZY|1|S2|A|564
28ZY|1|S2|G|565
*
28ZY|1|S2|C|585
28ZY|1|S2|G|586
28ZY|1|S2|A|587
28ZY|1|S2|G|588
28ZY|1|S2|G|589
28ZY|1|S2|A2M|590
28ZY|1|S2|U|591
28ZY|1|S2|C|592
28ZY|1|S2|C|593
28ZY|1|S2|A|594
28ZY|1|S2|U|595
*
28ZY|1|S2|A|641
28ZY|1|S2|U|642
28ZY|1|S2|A|643
28ZY|1|S2|OMG|644
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
Coloring options: