J5_2D3O_002

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGGAUG

Length

23 nucleotides

Bulged bases

2D3O|1|0|U|1268

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2D3O_002 not in the Motif Atlas

Homologous match to J5_7A0S_004

Geometric discrepancy: 0.1849

The information below is about J5_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.6

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

2D3O|1|0|C|593
2D3O|1|0|G|594
2D3O|1|0|A|595
2D3O|1|0|C|596
2D3O|1|0|U|597
2D3O|1|0|U|598
*
2D3O|1|0|A|681
2D3O|1|0|G|682
2D3O|1|0|A|683
2D3O|1|0|C|684
*
2D3O|1|0|G|822
2D3O|1|0|U|823
2D3O|1|0|U|824
2D3O|1|0|C|825
*
2D3O|1|0|G|1209
2D3O|1|0|C|1210
*
2D3O|1|0|G|1263
2D3O|1|0|C|1264
2D3O|1|0|G|1265
2D3O|1|0|G|1266
2D3O|1|0|A|1267
2D3O|1|0|U|1268
2D3O|1|0|G|1269

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains