J5_2D3O_003

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

ACGAAAAGACC*GGAUAACA*UCGAUGUCG*UGGGUUCAG*CGGUCUCUAU

Length

47 nucleotides

Bulged bases

2D3O|1|0|C|2038, 2D3O|1|0|A|2045, 2D3O|1|0|A|2427, 2D3O|1|0|U|2564, 2D3O|1|0|U|2588, 2D3O|1|0|C|2591, 2D3O|1|0|U|2592, 2D3O|1|0|A|2593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2D3O|1|0|A|2037
2D3O|1|0|C|2038
2D3O|1|0|G|2039
2D3O|1|0|A|2040
2D3O|1|0|A|2041
2D3O|1|0|A|2042
2D3O|1|0|A|2043
2D3O|1|0|G|2044
2D3O|1|0|A|2045
2D3O|1|0|C|2046
2D3O|1|0|C|2047
*
2D3O|1|0|G|2425
2D3O|1|0|G|2426
2D3O|1|0|A|2427
2D3O|1|0|U|2428
2D3O|1|0|A|2429
2D3O|1|0|A|2430
2D3O|1|0|C|2431
2D3O|1|0|A|2432
*
2D3O|1|0|U|2479
2D3O|1|0|C|2480
2D3O|1|0|G|2481
2D3O|1|0|A|2482
2D3O|1|0|U|2483
2D3O|1|0|G|2484
2D3O|1|0|U|2485
2D3O|1|0|C|2486
2D3O|1|0|G|2487
*
2D3O|1|0|U|2559
2D3O|1|0|G|2560
2D3O|1|0|G|2561
2D3O|1|0|G|2562
2D3O|1|0|U|2563
2D3O|1|0|U|2564
2D3O|1|0|C|2565
2D3O|1|0|A|2566
2D3O|1|0|G|2567
*
2D3O|1|0|C|2585
2D3O|1|0|G|2586
2D3O|1|0|G|2587
2D3O|1|0|U|2588
2D3O|1|0|C|2589
2D3O|1|0|U|2590
2D3O|1|0|C|2591
2D3O|1|0|U|2592
2D3O|1|0|A|2593
2D3O|1|0|U|2594

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains