Loop J5_2D3O

3D structure

PDB id: 2D3O (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å

Loop

Sequence: ACGAAAAGACC*GGAUAACAG*CCUCGAUGUCG*UGGGUUCAG*CGGUCUCUAU
Length: 50 nucleotides
Bulged bases: 2D3O|1|0|A|2045, 2D3O|1|0|A|2427, 2D3O|1|0|U|2564, 2D3O|1|0|U|2588, 2D3O|1|0|C|2591, 2D3O|1|0|U|2592, 2D3O|1|0|A|2593
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

2D3O|1|0|A|2037
2D3O|1|0|C|2038
2D3O|1|0|G|2039
2D3O|1|0|A|2040
2D3O|1|0|A|2041
2D3O|1|0|A|2042
2D3O|1|0|A|2043
2D3O|1|0|G|2044
2D3O|1|0|A|2045
2D3O|1|0|C|2046
2D3O|1|0|C|2047
*
2D3O|1|0|G|2425
2D3O|1|0|G|2426
2D3O|1|0|A|2427
2D3O|1|0|U|2428
2D3O|1|0|A|2429
2D3O|1|0|A|2430
2D3O|1|0|C|2431
2D3O|1|0|A|2432
2D3O|1|0|G|2433
*
2D3O|1|0|C|2477
2D3O|1|0|C|2478
2D3O|1|0|U|2479
2D3O|1|0|C|2480
2D3O|1|0|G|2481
2D3O|1|0|A|2482
2D3O|1|0|U|2483
2D3O|1|0|G|2484
2D3O|1|0|U|2485
2D3O|1|0|C|2486
2D3O|1|0|G|2487
*
2D3O|1|0|U|2559
2D3O|1|0|G|2560
2D3O|1|0|G|2561
2D3O|1|0|G|2562
2D3O|1|0|U|2563
2D3O|1|0|U|2564
2D3O|1|0|C|2565
2D3O|1|0|A|2566
2D3O|1|0|G|2567
*
2D3O|1|0|C|2585
2D3O|1|0|G|2586
2D3O|1|0|G|2587
2D3O|1|0|U|2588
2D3O|1|0|C|2589
2D3O|1|0|U|2590
2D3O|1|0|C|2591
2D3O|1|0|U|2592
2D3O|1|0|A|2593
2D3O|1|0|U|2594

Current chains

Chain 0: 23S RIBOSOMAL RNA

Nearby chains

No other chains within 10Å

J5_2D3O_004