J5_2D3O_006

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AUG

Length

22 nucleotides

Bulged bases

2D3O|1|0|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2D3O_006 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.224

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

2D3O|1|0|C|46
2D3O|1|0|G|47
2D3O|1|0|A|48
2D3O|1|0|U|49
2D3O|1|0|G|50
2D3O|1|0|A|51
2D3O|1|0|A|52
2D3O|1|0|G|53
*
2D3O|1|0|C|114
2D3O|1|0|G|115
2D3O|1|0|A|116
2D3O|1|0|A|117
2D3O|1|0|U|118
2D3O|1|0|G|119
*
2D3O|1|0|C|128
2D3O|1|0|A|129
*
2D3O|1|0|U|142
2D3O|1|0|A|143
2D3O|1|0|U|144
*
2D3O|1|0|A|153
2D3O|1|0|U|154
2D3O|1|0|G|155

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain R

50S RIBOSOMAL PROTEIN L23

Chain W

50S RIBOSOMAL PROTEIN L29