J5_2F4V_002

3D structure

PDB id

2F4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosome + designer antibiotic

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCAAG*CGGACGGG*CAG*CAC*GGCAGC

Length

25 nucleotides

Bulged bases

2F4V|1|A|A|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2F4V|1|A|G|57
2F4V|1|A|C|58
2F4V|1|A|A|59
2F4V|1|A|A|60
2F4V|1|A|G|61
*
2F4V|1|A|C|106
2F4V|1|A|G|107
2F4V|1|A|G|108
2F4V|1|A|A|109
2F4V|1|A|C|110
2F4V|1|A|G|111
2F4V|1|A|G|112
2F4V|1|A|G|113
*
2F4V|1|A|C|314
2F4V|1|A|A|315
2F4V|1|A|G|316
*
2F4V|1|A|C|337
2F4V|1|A|A|338
2F4V|1|A|C|339
*
2F4V|1|A|G|350
2F4V|1|A|G|351
2F4V|1|A|C|352
2F4V|1|A|A|353
2F4V|1|A|G|354
2F4V|1|A|C|355

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20