J5_2O44_001

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GGAAC*GGAGAAGAAAGAGAAUUCGAUU*AUCAG*CUAAAUAC

Length

42 nucleotides

Bulged bases

2O44|1|A|A|200, 2O44|1|A|U|206, 2O44|1|A|A|242, 2O44|1|A|A|441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O44|1|A|G|44
2O44|1|A|C|45
*
2O44|1|A|G|156
2O44|1|A|G|157
2O44|1|A|A|158
2O44|1|A|A|159
2O44|1|A|C|160
*
2O44|1|A|G|191
2O44|1|A|G|192
2O44|1|A|A|193
2O44|1|A|G|194
2O44|1|A|A|195
2O44|1|A|A|196
2O44|1|A|G|197
2O44|1|A|A|198
2O44|1|A|A|199
2O44|1|A|A|200
2O44|1|A|G|201
2O44|1|A|A|202
2O44|1|A|G|203
2O44|1|A|A|204
2O44|1|A|A|205
2O44|1|A|U|206
2O44|1|A|U|207
2O44|1|A|C|208
2O44|1|A|G|209
2O44|1|A|A|210
2O44|1|A|U|211
2O44|1|A|U|212
*
2O44|1|A|A|239
2O44|1|A|U|240
2O44|1|A|C|241
2O44|1|A|A|242
2O44|1|A|G|243
*
2O44|1|A|C|439
2O44|1|A|U|440
2O44|1|A|A|441
2O44|1|A|A|442
2O44|1|A|A|443
2O44|1|A|U|444
2O44|1|A|A|445
2O44|1|A|C|446

Current chains

Chain A

23S rRNA

Nearby chains