J5_2O44_003

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGGAUG

Length

23 nucleotides

Bulged bases

2O44|1|A|U|1268

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2O44_003 not in the Motif Atlas

Homologous match to J5_7A0S_004

Geometric discrepancy: 0.138

The information below is about J5_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.6

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

2O44|1|A|C|593
2O44|1|A|G|594
2O44|1|A|A|595
2O44|1|A|C|596
2O44|1|A|U|597
2O44|1|A|U|598
*
2O44|1|A|A|681
2O44|1|A|G|682
2O44|1|A|A|683
2O44|1|A|C|684
*
2O44|1|A|G|822
2O44|1|A|U|823
2O44|1|A|U|824
2O44|1|A|C|825
*
2O44|1|A|G|1209
2O44|1|A|C|1210
*
2O44|1|A|G|1263
2O44|1|A|C|1264
2O44|1|A|G|1265
2O44|1|A|G|1266
2O44|1|A|A|1267
2O44|1|A|U|1268
2O44|1|A|G|1269

Current chains

Chain A

23S rRNA

Nearby chains