J5_2O44_004

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UAAGGAACUUUGCAAUCUCAC*GUC*GC*GUGAAUAGG*CGCUGUCUCA

Length

45 nucleotides

Bulged bases

2O44|1|A|G|1749, 2O44|1|A|G|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O44|1|A|U|1680
2O44|1|A|A|1681
2O44|1|A|A|1682
2O44|1|A|G|1683
2O44|1|A|G|1684
2O44|1|A|A|1685
2O44|1|A|A|1686
2O44|1|A|C|1687
2O44|1|A|U|1688
2O44|1|A|U|1689
2O44|1|A|U|1690
2O44|1|A|G|1691
2O44|1|A|C|1692
2O44|1|A|A|1693
2O44|1|A|A|1694
2O44|1|A|U|1695
2O44|1|A|C|1696
2O44|1|A|U|1697
2O44|1|A|C|1698
2O44|1|A|A|1699
2O44|1|A|C|1700
*
2O44|1|A|G|1722
2O44|1|A|U|1723
2O44|1|A|C|1724
*
2O44|1|A|G|1742
2O44|1|A|C|1743
*
2O44|1|A|G|1747
2O44|1|A|U|1748
2O44|1|A|G|1749
2O44|1|A|A|1750
2O44|1|A|A|1751
2O44|1|A|U|1752
2O44|1|A|A|1753
2O44|1|A|G|1754
2O44|1|A|G|1755
*
2O44|1|A|C|1971
2O44|1|A|G|1972
2O44|1|A|C|1973
2O44|1|A|U|1974
2O44|1|A|G|1975
2O44|1|A|U|1976
2O44|1|A|C|1977
2O44|1|A|U|1978
2O44|1|A|C|1979
2O44|1|A|A|1980

Current chains

Chain A

23S rRNA

Nearby chains