J5_2O44_005

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

2O44|1|A|A|2045, 2O44|1|A|A|2427, 2O44|1|A|U|2428, 2O44|1|A|U|2588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O44|1|A|A|2040
2O44|1|A|A|2041
2O44|1|A|A|2042
2O44|1|A|A|2043
2O44|1|A|G|2044
2O44|1|A|A|2045
2O44|1|A|C|2046
2O44|1|A|C|2047
*
2O44|1|A|G|2425
2O44|1|A|G|2426
2O44|1|A|A|2427
2O44|1|A|U|2428
2O44|1|A|A|2429
2O44|1|A|A|2430
2O44|1|A|C|2431
2O44|1|A|A|2432
*
2O44|1|A|U|2479
2O44|1|A|C|2480
2O44|1|A|G|2481
2O44|1|A|A|2482
2O44|1|A|U|2483
2O44|1|A|G|2484
2O44|1|A|U|2485
2O44|1|A|C|2486
*
2O44|1|A|G|2561
2O44|1|A|G|2562
2O44|1|A|U|2563
2O44|1|A|U|2564
2O44|1|A|C|2565
2O44|1|A|A|2566
2O44|1|A|G|2567
*
2O44|1|A|C|2585
2O44|1|A|G|2586
2O44|1|A|G|2587
2O44|1|A|U|2588
2O44|1|A|C|2589
2O44|1|A|U|2590

Current chains

Chain A

23S rRNA

Nearby chains