J5_2O45_002

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGGAUG

Length

23 nucleotides

Bulged bases

2O45|1|A|U|824, 2O45|1|A|U|1268

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2O45_002 not in the Motif Atlas

Homologous match to J5_7A0S_004

Geometric discrepancy: 0.1572

The information below is about J5_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.6

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

2O45|1|A|C|593
2O45|1|A|G|594
2O45|1|A|A|595
2O45|1|A|C|596
2O45|1|A|U|597
2O45|1|A|U|598
*
2O45|1|A|A|681
2O45|1|A|G|682
2O45|1|A|A|683
2O45|1|A|C|684
*
2O45|1|A|G|822
2O45|1|A|U|823
2O45|1|A|U|824
2O45|1|A|C|825
*
2O45|1|A|G|1209
2O45|1|A|C|1210
*
2O45|1|A|G|1263
2O45|1|A|C|1264
2O45|1|A|G|1265
2O45|1|A|G|1266
2O45|1|A|A|1267
2O45|1|A|U|1268
2O45|1|A|G|1269

Current chains

Chain A

23S rRNA

Nearby chains