J5_2O45_005

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AUG

Length

22 nucleotides

Bulged bases

2O45|1|A|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2O45_005 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.2401

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

2O45|1|A|C|46
2O45|1|A|G|47
2O45|1|A|A|48
2O45|1|A|U|49
2O45|1|A|G|50
2O45|1|A|A|51
2O45|1|A|A|52
2O45|1|A|G|53
*
2O45|1|A|C|114
2O45|1|A|G|115
2O45|1|A|A|116
2O45|1|A|A|117
2O45|1|A|U|118
2O45|1|A|G|119
*
2O45|1|A|C|128
2O45|1|A|A|129
*
2O45|1|A|U|142
2O45|1|A|A|143
2O45|1|A|U|144
*
2O45|1|A|A|153
2O45|1|A|U|154
2O45|1|A|G|155

Current chains

Chain A

23S rRNA

Nearby chains