J5_2O45_006

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUCG*UGGGUUCAG*CGGUCU

Length

40 nucleotides

Bulged bases

2O45|1|A|A|2045, 2O45|1|A|A|2427, 2O45|1|A|G|2484, 2O45|1|A|U|2485, 2O45|1|A|U|2564, 2O45|1|A|U|2588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O45|1|A|A|2040
2O45|1|A|A|2041
2O45|1|A|A|2042
2O45|1|A|A|2043
2O45|1|A|G|2044
2O45|1|A|A|2045
2O45|1|A|C|2046
2O45|1|A|C|2047
*
2O45|1|A|G|2425
2O45|1|A|G|2426
2O45|1|A|A|2427
2O45|1|A|U|2428
2O45|1|A|A|2429
2O45|1|A|A|2430
2O45|1|A|C|2431
2O45|1|A|A|2432
*
2O45|1|A|U|2479
2O45|1|A|C|2480
2O45|1|A|G|2481
2O45|1|A|A|2482
2O45|1|A|U|2483
2O45|1|A|G|2484
2O45|1|A|U|2485
2O45|1|A|C|2486
2O45|1|A|G|2487
*
2O45|1|A|U|2559
2O45|1|A|G|2560
2O45|1|A|G|2561
2O45|1|A|G|2562
2O45|1|A|U|2563
2O45|1|A|U|2564
2O45|1|A|C|2565
2O45|1|A|A|2566
2O45|1|A|G|2567
*
2O45|1|A|C|2585
2O45|1|A|G|2586
2O45|1|A|G|2587
2O45|1|A|U|2588
2O45|1|A|C|2589
2O45|1|A|U|2590

Current chains

Chain A

23S rRNA

Nearby chains