J5_2OTJ_007

3D structure

PDB id

2OTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAGACC*GGAUAACAG*CCUCGAUGU*G(UR3)U(PSU)AG*CGGCUG

Length

38 nucleotides

Bulged bases

2OTJ|1|0|A|2483, 2OTJ|1|0|U|2539, 2OTJ|1|0|C|2644, 2OTJ|1|0|U|2645

QA status

Modified nucleotides: UR3, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OTJ|1|0|C|2098
2OTJ|1|0|G|2099
2OTJ|1|0|A|2100
2OTJ|1|0|A|2101
2OTJ|1|0|G|2102
2OTJ|1|0|A|2103
2OTJ|1|0|C|2104
2OTJ|1|0|C|2105
*
2OTJ|1|0|G|2481
2OTJ|1|0|G|2482
2OTJ|1|0|A|2483
2OTJ|1|0|U|2484
2OTJ|1|0|A|2485
2OTJ|1|0|A|2486
2OTJ|1|0|C|2487
2OTJ|1|0|A|2488
2OTJ|1|0|G|2489
*
2OTJ|1|0|C|2533
2OTJ|1|0|C|2534
2OTJ|1|0|U|2535
2OTJ|1|0|C|2536
2OTJ|1|0|G|2537
2OTJ|1|0|A|2538
2OTJ|1|0|U|2539
2OTJ|1|0|G|2540
2OTJ|1|0|U|2541
*
2OTJ|1|0|G|2618
2OTJ|1|0|UR3|2619
2OTJ|1|0|U|2620
2OTJ|1|0|PSU|2621
2OTJ|1|0|A|2622
2OTJ|1|0|G|2623
*
2OTJ|1|0|C|2641
2OTJ|1|0|G|2642
2OTJ|1|0|G|2643
2OTJ|1|0|C|2644
2OTJ|1|0|U|2645
2OTJ|1|0|G|2646

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain B

50S ribosomal protein L3P

Chain C

50S ribosomal protein L4P

Chain L

50S ribosomal protein L15P

Chain R

50S ribosomal protein L22P