J5_2OTL_007

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAGACC*GGAUAACAG*CCUCGAUGU*G(UR3)U(PSU)AG*CGGCUG

Length

38 nucleotides

Bulged bases

2OTL|1|0|A|2483, 2OTL|1|0|C|2644, 2OTL|1|0|U|2645

QA status

Modified nucleotides: UR3, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OTL|1|0|C|2098
2OTL|1|0|G|2099
2OTL|1|0|A|2100
2OTL|1|0|A|2101
2OTL|1|0|G|2102
2OTL|1|0|A|2103
2OTL|1|0|C|2104
2OTL|1|0|C|2105
*
2OTL|1|0|G|2481
2OTL|1|0|G|2482
2OTL|1|0|A|2483
2OTL|1|0|U|2484
2OTL|1|0|A|2485
2OTL|1|0|A|2486
2OTL|1|0|C|2487
2OTL|1|0|A|2488
2OTL|1|0|G|2489
*
2OTL|1|0|C|2533
2OTL|1|0|C|2534
2OTL|1|0|U|2535
2OTL|1|0|C|2536
2OTL|1|0|G|2537
2OTL|1|0|A|2538
2OTL|1|0|U|2539
2OTL|1|0|G|2540
2OTL|1|0|U|2541
*
2OTL|1|0|G|2618
2OTL|1|0|UR3|2619
2OTL|1|0|U|2620
2OTL|1|0|PSU|2621
2OTL|1|0|A|2622
2OTL|1|0|G|2623
*
2OTL|1|0|C|2641
2OTL|1|0|G|2642
2OTL|1|0|G|2643
2OTL|1|0|C|2644
2OTL|1|0|U|2645
2OTL|1|0|G|2646

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain B

50S ribosomal protein L3P

Chain C

50S ribosomal protein L4P

Chain H

50S ribosomal protein L10e

Chain L

50S ribosomal protein L15P

Chain R

50S ribosomal protein L22P