J5_2QA4_002

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAAAC*GUGUCAG*CAGAGUAG*CGAAUAAC*GAAG

Length

33 nucleotides

Bulged bases

2QA4|1|0|A|272, 2QA4|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2QA4|1|0|C|239
2QA4|1|0|C|240
2QA4|1|0|A|241
2QA4|1|0|A|242
2QA4|1|0|A|243
2QA4|1|0|C|244
*
2QA4|1|0|G|267
2QA4|1|0|U|268
2QA4|1|0|G|269
2QA4|1|0|U|270
2QA4|1|0|C|271
2QA4|1|0|A|272
2QA4|1|0|G|273
*
2QA4|1|0|C|377
2QA4|1|0|A|378
2QA4|1|0|G|379
2QA4|1|0|A|380
2QA4|1|0|G|381
2QA4|1|0|U|382
2QA4|1|0|A|383
2QA4|1|0|G|384
*
2QA4|1|0|C|405
2QA4|1|0|G|406
2QA4|1|0|A|407
2QA4|1|0|A|408
2QA4|1|0|U|409
2QA4|1|0|A|410
2QA4|1|0|A|411
2QA4|1|0|C|412
*
2QA4|1|0|G|428
2QA4|1|0|A|429
2QA4|1|0|A|430
2QA4|1|0|G|431

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain F

50S ribosomal protein L7Ae

Chain M

50S ribosomal protein L15e