Loop J5_2QEX

3D structure

PDB id: 2QEX (explore in PDB, NAKB, or RNA 3D Hub)
Description: Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å

Loop

Sequence: CGAAGACCC*GGGAUAACAG*CCUCGAUGU*G(UR3)U(PSU)AG*CGGCUG
Length: 40 nucleotides
Bulged bases: 2QEX|1|0|A|2483, 2QEX|1|0|U|2539, 2QEX|1|0|C|2644, 2QEX|1|0|U|2645
QA status: Modified nucleotides: UR3, PSU

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

2QEX|1|0|C|2098
2QEX|1|0|G|2099
2QEX|1|0|A|2100
2QEX|1|0|A|2101
2QEX|1|0|G|2102
2QEX|1|0|A|2103
2QEX|1|0|C|2104
2QEX|1|0|C|2105
2QEX|1|0|C|2106
*
2QEX|1|0|G|2480
2QEX|1|0|G|2481
2QEX|1|0|G|2482
2QEX|1|0|A|2483
2QEX|1|0|U|2484
2QEX|1|0|A|2485
2QEX|1|0|A|2486
2QEX|1|0|C|2487
2QEX|1|0|A|2488
2QEX|1|0|G|2489
*
2QEX|1|0|C|2533
2QEX|1|0|C|2534
2QEX|1|0|U|2535
2QEX|1|0|C|2536
2QEX|1|0|G|2537
2QEX|1|0|A|2538
2QEX|1|0|U|2539
2QEX|1|0|G|2540
2QEX|1|0|U|2541
*
2QEX|1|0|G|2618
2QEX|1|0|UR3|2619
2QEX|1|0|U|2620
2QEX|1|0|PSU|2621
2QEX|1|0|A|2622
2QEX|1|0|G|2623
*
2QEX|1|0|C|2641
2QEX|1|0|G|2642
2QEX|1|0|G|2643
2QEX|1|0|C|2644
2QEX|1|0|U|2645
2QEX|1|0|G|2646

Current chains

Chain 0: 23S ribosomal RNA

Nearby chains

Chain A: 50S ribosomal protein L2P
Chain B: 50S ribosomal protein L3P
Chain C: 50S ribosomal protein L4P
Chain H: 50S ribosomal protein L10e
Chain L: 50S ribosomal protein L15P

J5_2QEX_007