J5_2ZJP_008
3D structure
- PDB id
- 2ZJP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUCG*UGGGUUCAG*CGGUCU
- Length
- 40 nucleotides
- Bulged bases
- 2ZJP|1|X|A|2045, 2ZJP|1|X|A|2427, 2ZJP|1|X|U|2428, 2ZJP|1|X|U|2564, 2ZJP|1|X|U|2588
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
2ZJP|1|X|A|2040
2ZJP|1|X|A|2041
2ZJP|1|X|A|2042
2ZJP|1|X|A|2043
2ZJP|1|X|G|2044
2ZJP|1|X|A|2045
2ZJP|1|X|C|2046
2ZJP|1|X|C|2047
*
2ZJP|1|X|G|2425
2ZJP|1|X|G|2426
2ZJP|1|X|A|2427
2ZJP|1|X|U|2428
2ZJP|1|X|A|2429
2ZJP|1|X|A|2430
2ZJP|1|X|C|2431
2ZJP|1|X|A|2432
*
2ZJP|1|X|U|2479
2ZJP|1|X|C|2480
2ZJP|1|X|G|2481
2ZJP|1|X|A|2482
2ZJP|1|X|U|2483
2ZJP|1|X|G|2484
2ZJP|1|X|U|2485
2ZJP|1|X|C|2486
2ZJP|1|X|G|2487
*
2ZJP|1|X|U|2559
2ZJP|1|X|G|2560
2ZJP|1|X|G|2561
2ZJP|1|X|G|2562
2ZJP|1|X|U|2563
2ZJP|1|X|U|2564
2ZJP|1|X|C|2565
2ZJP|1|X|A|2566
2ZJP|1|X|G|2567
*
2ZJP|1|X|C|2585
2ZJP|1|X|G|2586
2ZJP|1|X|G|2587
2ZJP|1|X|U|2588
2ZJP|1|X|C|2589
2ZJP|1|X|U|2590
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain A
- 50S RIBOSOMAL PROTEIN L2
- Chain B
- 50S RIBOSOMAL PROTEIN L3
- Chain C
- 50S RIBOSOMAL PROTEIN L4
- Chain I
- 50S RIBOSOMAL PROTEIN L15
- Chain P
- 50S RIBOSOMAL PROTEIN L22
- Chain Y
- 50S RIBOSOMAL PROTEIN L32
Coloring options: