J5_3CCE_007

3D structure

PDB id

3CCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535A

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CAAAGACC*GGAUAACAG*CCACGAUGU*G(UR3)U(PSU)AG*CGGCUG

Length

38 nucleotides

Bulged bases

3CCE|1|0|A|2483, 3CCE|1|0|U|2539, 3CCE|1|0|C|2644, 3CCE|1|0|U|2645

QA status

Modified nucleotides: UR3, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3CCE|1|0|C|2098
3CCE|1|0|A|2099
3CCE|1|0|A|2100
3CCE|1|0|A|2101
3CCE|1|0|G|2102
3CCE|1|0|A|2103
3CCE|1|0|C|2104
3CCE|1|0|C|2105
*
3CCE|1|0|G|2481
3CCE|1|0|G|2482
3CCE|1|0|A|2483
3CCE|1|0|U|2484
3CCE|1|0|A|2485
3CCE|1|0|A|2486
3CCE|1|0|C|2487
3CCE|1|0|A|2488
3CCE|1|0|G|2489
*
3CCE|1|0|C|2533
3CCE|1|0|C|2534
3CCE|1|0|A|2535
3CCE|1|0|C|2536
3CCE|1|0|G|2537
3CCE|1|0|A|2538
3CCE|1|0|U|2539
3CCE|1|0|G|2540
3CCE|1|0|U|2541
*
3CCE|1|0|G|2618
3CCE|1|0|UR3|2619
3CCE|1|0|U|2620
3CCE|1|0|PSU|2621
3CCE|1|0|A|2622
3CCE|1|0|G|2623
*
3CCE|1|0|C|2641
3CCE|1|0|G|2642
3CCE|1|0|G|2643
3CCE|1|0|C|2644
3CCE|1|0|U|2645
3CCE|1|0|G|2646

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain B

50S ribosomal protein L3P

Chain C

50S ribosomal protein L4P

Chain L

50S ribosomal protein L15P

Chain R

50S ribosomal protein L22P