Loop J5_3CCL

3D structure

PDB id: 3CCL (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535C. Density for Anisomycin is visible but not included in model.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å

Loop

Sequence: CAAAGACC*GGAUAACAG*CCCCGAUGU*G(UR3)U(PSU)AG*CGGCUG
Length: 38 nucleotides
Bulged bases: 3CCL|1|0|A|2483, 3CCL|1|0|U|2539, 3CCL|1|0|C|2644, 3CCL|1|0|U|2645
QA status: Modified nucleotides: UR3, PSU

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3CCL|1|0|C|2098
3CCL|1|0|A|2099
3CCL|1|0|A|2100
3CCL|1|0|A|2101
3CCL|1|0|G|2102
3CCL|1|0|A|2103
3CCL|1|0|C|2104
3CCL|1|0|C|2105
*
3CCL|1|0|G|2481
3CCL|1|0|G|2482
3CCL|1|0|A|2483
3CCL|1|0|U|2484
3CCL|1|0|A|2485
3CCL|1|0|A|2486
3CCL|1|0|C|2487
3CCL|1|0|A|2488
3CCL|1|0|G|2489
*
3CCL|1|0|C|2533
3CCL|1|0|C|2534
3CCL|1|0|C|2535
3CCL|1|0|C|2536
3CCL|1|0|G|2537
3CCL|1|0|A|2538
3CCL|1|0|U|2539
3CCL|1|0|G|2540
3CCL|1|0|U|2541
*
3CCL|1|0|G|2618
3CCL|1|0|UR3|2619
3CCL|1|0|U|2620
3CCL|1|0|PSU|2621
3CCL|1|0|A|2622
3CCL|1|0|G|2623
*
3CCL|1|0|C|2641
3CCL|1|0|G|2642
3CCL|1|0|G|2643
3CCL|1|0|C|2644
3CCL|1|0|U|2645
3CCL|1|0|G|2646

Current chains

Chain 0: 23S RIBOSOMAL RNA

Nearby chains

Chain A: 50S ribosomal protein L2P
Chain B: 50S ribosomal protein L3P
Chain C: 50S ribosomal protein L4P
Chain L: 50S ribosomal protein L15P
Chain R: 50S ribosomal protein L22P

J5_3CCL_007