J5_3CCQ_007

3D structure

PDB id

3CCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAAGACC*GGAUAACUG*CCUCGAUGU*G(UR3)U(PSU)AG*CGGCUG

Length

38 nucleotides

Bulged bases

3CCQ|1|0|A|2483, 3CCQ|1|0|U|2539, 3CCQ|1|0|C|2644, 3CCQ|1|0|U|2645

QA status

Modified nucleotides: UR3, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3CCQ|1|0|C|2098
3CCQ|1|0|A|2099
3CCQ|1|0|A|2100
3CCQ|1|0|A|2101
3CCQ|1|0|G|2102
3CCQ|1|0|A|2103
3CCQ|1|0|C|2104
3CCQ|1|0|C|2105
*
3CCQ|1|0|G|2481
3CCQ|1|0|G|2482
3CCQ|1|0|A|2483
3CCQ|1|0|U|2484
3CCQ|1|0|A|2485
3CCQ|1|0|A|2486
3CCQ|1|0|C|2487
3CCQ|1|0|U|2488
3CCQ|1|0|G|2489
*
3CCQ|1|0|C|2533
3CCQ|1|0|C|2534
3CCQ|1|0|U|2535
3CCQ|1|0|C|2536
3CCQ|1|0|G|2537
3CCQ|1|0|A|2538
3CCQ|1|0|U|2539
3CCQ|1|0|G|2540
3CCQ|1|0|U|2541
*
3CCQ|1|0|G|2618
3CCQ|1|0|UR3|2619
3CCQ|1|0|U|2620
3CCQ|1|0|PSU|2621
3CCQ|1|0|A|2622
3CCQ|1|0|G|2623
*
3CCQ|1|0|C|2641
3CCQ|1|0|G|2642
3CCQ|1|0|G|2643
3CCQ|1|0|C|2644
3CCQ|1|0|U|2645
3CCQ|1|0|G|2646

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain B

50S ribosomal protein L3P

Chain C

50S ribosomal protein L4P

Chain L

50S ribosomal protein L15P

Chain R

50S ribosomal protein L22P