Loop J5_3CCR

3D structure

PDB id: 3CCR (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488C. Density for anisomycin is visible but not included in the model.
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å

Loop

Sequence: CAAAGACC*GGAUAACCG*CCUCGAUGU*G(UR3)U(PSU)AG*CGGCUG
Length: 38 nucleotides
Bulged bases: 3CCR|1|0|A|2483, 3CCR|1|0|U|2539, 3CCR|1|0|C|2644, 3CCR|1|0|U|2645
QA status: Modified nucleotides: UR3, PSU

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3CCR|1|0|C|2098
3CCR|1|0|A|2099
3CCR|1|0|A|2100
3CCR|1|0|A|2101
3CCR|1|0|G|2102
3CCR|1|0|A|2103
3CCR|1|0|C|2104
3CCR|1|0|C|2105
*
3CCR|1|0|G|2481
3CCR|1|0|G|2482
3CCR|1|0|A|2483
3CCR|1|0|U|2484
3CCR|1|0|A|2485
3CCR|1|0|A|2486
3CCR|1|0|C|2487
3CCR|1|0|C|2488
3CCR|1|0|G|2489
*
3CCR|1|0|C|2533
3CCR|1|0|C|2534
3CCR|1|0|U|2535
3CCR|1|0|C|2536
3CCR|1|0|G|2537
3CCR|1|0|A|2538
3CCR|1|0|U|2539
3CCR|1|0|G|2540
3CCR|1|0|U|2541
*
3CCR|1|0|G|2618
3CCR|1|0|UR3|2619
3CCR|1|0|U|2620
3CCR|1|0|PSU|2621
3CCR|1|0|A|2622
3CCR|1|0|G|2623
*
3CCR|1|0|C|2641
3CCR|1|0|G|2642
3CCR|1|0|G|2643
3CCR|1|0|C|2644
3CCR|1|0|U|2645
3CCR|1|0|G|2646

Current chains

Chain 0: 23S RIBOSOMAL RNA

Nearby chains

Chain A: 50S ribosomal protein L2P
Chain B: 50S ribosomal protein L3P
Chain C: 50S ribosomal protein L4P
Chain L: 50S ribosomal protein L15P
Chain R: 50S ribosomal protein L22P

J5_3CCR_007