J5_3CCU_007

3D structure

PDB id

3CCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2482C

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAAAGACC*GCAUAACAG*CCUCGAUGU*G(UR3)U(PSU)AG*CGGCUG

Length

38 nucleotides

Bulged bases

3CCU|1|0|A|2483, 3CCU|1|0|C|2644, 3CCU|1|0|U|2645

QA status

Modified nucleotides: UR3, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3CCU|1|0|C|2098
3CCU|1|0|A|2099
3CCU|1|0|A|2100
3CCU|1|0|A|2101
3CCU|1|0|G|2102
3CCU|1|0|A|2103
3CCU|1|0|C|2104
3CCU|1|0|C|2105
*
3CCU|1|0|G|2481
3CCU|1|0|C|2482
3CCU|1|0|A|2483
3CCU|1|0|U|2484
3CCU|1|0|A|2485
3CCU|1|0|A|2486
3CCU|1|0|C|2487
3CCU|1|0|A|2488
3CCU|1|0|G|2489
*
3CCU|1|0|C|2533
3CCU|1|0|C|2534
3CCU|1|0|U|2535
3CCU|1|0|C|2536
3CCU|1|0|G|2537
3CCU|1|0|A|2538
3CCU|1|0|U|2539
3CCU|1|0|G|2540
3CCU|1|0|U|2541
*
3CCU|1|0|G|2618
3CCU|1|0|UR3|2619
3CCU|1|0|U|2620
3CCU|1|0|PSU|2621
3CCU|1|0|A|2622
3CCU|1|0|G|2623
*
3CCU|1|0|C|2641
3CCU|1|0|G|2642
3CCU|1|0|G|2643
3CCU|1|0|C|2644
3CCU|1|0|U|2645
3CCU|1|0|G|2646

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain B

50S ribosomal protein L3P

Chain C

50S ribosomal protein L4P

Chain L

50S ribosomal protein L15P

Chain R

50S ribosomal protein L22P