J5_3CCV_007

3D structure

PDB id

3CCV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2616A

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAAGACC*GGAUAACAG*CCUCGAUGU*G(UR3)U(PSU)AG*CGGCUG

Length

38 nucleotides

Bulged bases

3CCV|1|0|A|2483, 3CCV|1|0|U|2539, 3CCV|1|0|C|2644, 3CCV|1|0|U|2645

QA status

Modified nucleotides: UR3, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3CCV|1|0|C|2098
3CCV|1|0|A|2099
3CCV|1|0|A|2100
3CCV|1|0|A|2101
3CCV|1|0|G|2102
3CCV|1|0|A|2103
3CCV|1|0|C|2104
3CCV|1|0|C|2105
*
3CCV|1|0|G|2481
3CCV|1|0|G|2482
3CCV|1|0|A|2483
3CCV|1|0|U|2484
3CCV|1|0|A|2485
3CCV|1|0|A|2486
3CCV|1|0|C|2487
3CCV|1|0|A|2488
3CCV|1|0|G|2489
*
3CCV|1|0|C|2533
3CCV|1|0|C|2534
3CCV|1|0|U|2535
3CCV|1|0|C|2536
3CCV|1|0|G|2537
3CCV|1|0|A|2538
3CCV|1|0|U|2539
3CCV|1|0|G|2540
3CCV|1|0|U|2541
*
3CCV|1|0|G|2618
3CCV|1|0|UR3|2619
3CCV|1|0|U|2620
3CCV|1|0|PSU|2621
3CCV|1|0|A|2622
3CCV|1|0|G|2623
*
3CCV|1|0|C|2641
3CCV|1|0|G|2642
3CCV|1|0|G|2643
3CCV|1|0|C|2644
3CCV|1|0|U|2645
3CCV|1|0|G|2646

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain B

50S ribosomal protein L3P

Chain C

50S ribosomal protein L4P

Chain L

50S ribosomal protein L15P

Chain R

50S ribosomal protein L22P