J5_3CD6_007
3D structure
- PDB id
- 3CD6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- CAAAGACC*GGAUAACAG*CCUCGAUGUC*GG(UR3)U(PSU)AG*CGGCUG
- Length
- 40 nucleotides
- Bulged bases
- 3CD6|1|0|A|2483, 3CD6|1|0|G|2540, 3CD6|1|0|U|2541, 3CD6|1|0|C|2644, 3CD6|1|0|U|2645
- QA status
- Modified nucleotides: UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3CD6|1|0|C|2098
3CD6|1|0|A|2099
3CD6|1|0|A|2100
3CD6|1|0|A|2101
3CD6|1|0|G|2102
3CD6|1|0|A|2103
3CD6|1|0|C|2104
3CD6|1|0|C|2105
*
3CD6|1|0|G|2481
3CD6|1|0|G|2482
3CD6|1|0|A|2483
3CD6|1|0|U|2484
3CD6|1|0|A|2485
3CD6|1|0|A|2486
3CD6|1|0|C|2487
3CD6|1|0|A|2488
3CD6|1|0|G|2489
*
3CD6|1|0|C|2533
3CD6|1|0|C|2534
3CD6|1|0|U|2535
3CD6|1|0|C|2536
3CD6|1|0|G|2537
3CD6|1|0|A|2538
3CD6|1|0|U|2539
3CD6|1|0|G|2540
3CD6|1|0|U|2541
3CD6|1|0|C|2542
*
3CD6|1|0|G|2617
3CD6|1|0|G|2618
3CD6|1|0|UR3|2619
3CD6|1|0|U|2620
3CD6|1|0|PSU|2621
3CD6|1|0|A|2622
3CD6|1|0|G|2623
*
3CD6|1|0|C|2641
3CD6|1|0|G|2642
3CD6|1|0|G|2643
3CD6|1|0|C|2644
3CD6|1|0|U|2645
3CD6|1|0|G|2646
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 4
- RNA (5'-R(*CP*CP*(PPU))-3')
- Chain A
- 50S ribosomal protein L2P
- Chain B
- 50S ribosomal protein L3P
- Chain C
- 50S ribosomal protein L4P
- Chain L
- 50S ribosomal protein L15P
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