J5_3CF5_003
3D structure
- PDB id
- 3CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGGAUG
- Length
- 23 nucleotides
- Bulged bases
- 3CF5|1|X|U|1268
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3CF5_003 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.0812
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
3CF5|1|X|C|593
3CF5|1|X|G|594
3CF5|1|X|A|595
3CF5|1|X|C|596
3CF5|1|X|U|597
3CF5|1|X|U|598
*
3CF5|1|X|A|681
3CF5|1|X|G|682
3CF5|1|X|A|683
3CF5|1|X|C|684
*
3CF5|1|X|G|822
3CF5|1|X|U|823
3CF5|1|X|U|824
3CF5|1|X|C|825
*
3CF5|1|X|G|1209
3CF5|1|X|C|1210
*
3CF5|1|X|G|1263
3CF5|1|X|C|1264
3CF5|1|X|G|1265
3CF5|1|X|G|1266
3CF5|1|X|A|1267
3CF5|1|X|U|1268
3CF5|1|X|G|1269
Current chains
- Chain X
- RRNA-23S RIBOSOMAL RNA
Nearby chains
- Chain C
- 50S RIBOSOMAL PROTEIN L4
- Chain I
- 50S RIBOSOMAL PROTEIN L15
- Chain N
- 50S RIBOSOMAL PROTEIN L20
- Chain O
- 50S RIBOSOMAL PROTEIN L21
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