J5_3CF5_005

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

3CF5|1|X|A|2045, 3CF5|1|X|A|2427, 3CF5|1|X|U|2428, 3CF5|1|X|U|2564, 3CF5|1|X|U|2588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3CF5|1|X|A|2040
3CF5|1|X|A|2041
3CF5|1|X|A|2042
3CF5|1|X|A|2043
3CF5|1|X|G|2044
3CF5|1|X|A|2045
3CF5|1|X|C|2046
3CF5|1|X|C|2047
*
3CF5|1|X|G|2425
3CF5|1|X|G|2426
3CF5|1|X|A|2427
3CF5|1|X|U|2428
3CF5|1|X|A|2429
3CF5|1|X|A|2430
3CF5|1|X|C|2431
3CF5|1|X|A|2432
*
3CF5|1|X|U|2479
3CF5|1|X|C|2480
3CF5|1|X|G|2481
3CF5|1|X|A|2482
3CF5|1|X|U|2483
3CF5|1|X|G|2484
3CF5|1|X|U|2485
3CF5|1|X|C|2486
*
3CF5|1|X|G|2561
3CF5|1|X|G|2562
3CF5|1|X|U|2563
3CF5|1|X|U|2564
3CF5|1|X|C|2565
3CF5|1|X|A|2566
3CF5|1|X|G|2567
*
3CF5|1|X|C|2585
3CF5|1|X|G|2586
3CF5|1|X|G|2587
3CF5|1|X|U|2588
3CF5|1|X|C|2589
3CF5|1|X|U|2590

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2

Chain B

50S RIBOSOMAL PROTEIN L3

Chain C

50S RIBOSOMAL PROTEIN L4

Chain I

50S RIBOSOMAL PROTEIN L15

Chain P

50S RIBOSOMAL PROTEIN L22

Chain Y

50S RIBOSOMAL PROTEIN L32