J5_3CF5_008
3D structure
- PDB id
- 3CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGU*GUUCAG*CGGUCU
- Length
- 35 nucleotides
- Bulged bases
- 3CF5|1|X|A|2045, 3CF5|1|X|A|2427, 3CF5|1|X|U|2428, 3CF5|1|X|U|2564, 3CF5|1|X|U|2588
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3CF5|1|X|A|2040
3CF5|1|X|A|2041
3CF5|1|X|A|2042
3CF5|1|X|A|2043
3CF5|1|X|G|2044
3CF5|1|X|A|2045
3CF5|1|X|C|2046
3CF5|1|X|C|2047
*
3CF5|1|X|G|2425
3CF5|1|X|G|2426
3CF5|1|X|A|2427
3CF5|1|X|U|2428
3CF5|1|X|A|2429
3CF5|1|X|A|2430
3CF5|1|X|C|2431
3CF5|1|X|A|2432
*
3CF5|1|X|U|2479
3CF5|1|X|C|2480
3CF5|1|X|G|2481
3CF5|1|X|A|2482
3CF5|1|X|U|2483
3CF5|1|X|G|2484
3CF5|1|X|U|2485
*
3CF5|1|X|G|2562
3CF5|1|X|U|2563
3CF5|1|X|U|2564
3CF5|1|X|C|2565
3CF5|1|X|A|2566
3CF5|1|X|G|2567
*
3CF5|1|X|C|2585
3CF5|1|X|G|2586
3CF5|1|X|G|2587
3CF5|1|X|U|2588
3CF5|1|X|C|2589
3CF5|1|X|U|2590
Current chains
- Chain X
- RRNA-23S RIBOSOMAL RNA
Nearby chains
- Chain A
- 50S RIBOSOMAL PROTEIN L2
- Chain B
- 50S RIBOSOMAL PROTEIN L3
- Chain C
- 50S RIBOSOMAL PROTEIN L4
- Chain I
- 50S RIBOSOMAL PROTEIN L15
- Chain P
- 50S RIBOSOMAL PROTEIN L22
- Chain Y
- 50S RIBOSOMAL PROTEIN L32
Coloring options: