J5_3CXC_007

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAGACC*GGAUAACAG*CCUCGAUGU*GUUUAG*CGGCUG

Length

38 nucleotides

Bulged bases

3CXC|1|0|A|2483, 3CXC|1|0|U|2484, 3CXC|1|0|C|2644, 3CXC|1|0|U|2645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3CXC|1|0|C|2098
3CXC|1|0|G|2099
3CXC|1|0|A|2100
3CXC|1|0|A|2101
3CXC|1|0|G|2102
3CXC|1|0|A|2103
3CXC|1|0|C|2104
3CXC|1|0|C|2105
*
3CXC|1|0|G|2481
3CXC|1|0|G|2482
3CXC|1|0|A|2483
3CXC|1|0|U|2484
3CXC|1|0|A|2485
3CXC|1|0|A|2486
3CXC|1|0|C|2487
3CXC|1|0|A|2488
3CXC|1|0|G|2489
*
3CXC|1|0|C|2533
3CXC|1|0|C|2534
3CXC|1|0|U|2535
3CXC|1|0|C|2536
3CXC|1|0|G|2537
3CXC|1|0|A|2538
3CXC|1|0|U|2539
3CXC|1|0|G|2540
3CXC|1|0|U|2541
*
3CXC|1|0|G|2618
3CXC|1|0|U|2619
3CXC|1|0|U|2620
3CXC|1|0|U|2621
3CXC|1|0|A|2622
3CXC|1|0|G|2623
*
3CXC|1|0|C|2641
3CXC|1|0|G|2642
3CXC|1|0|G|2643
3CXC|1|0|C|2644
3CXC|1|0|U|2645
3CXC|1|0|G|2646

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 4

5'-R(*CP*CP*A)-3'

Chain A

RIBOSOMAL PROTEIN L2

Chain B

RIBOSOMAL PROTEIN L3

Chain C

RIBOSOMAL PROTEIN L4

Chain K

RIBOSOMAL PROTEIN L15

Chain Q

RIBOSOMAL PROTEIN L22