Loop J5_3G6E

3D structure

PDB id: 3G6E (explore in PDB, NAKB, or RNA 3D Hub)
Description: Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å

Loop

Sequence: CGAAGACC*GGAUAACAG*CCUCGAUGUC*GG(UR3)U(PSU)AG*CGGCUG
Length: 40 nucleotides
Bulged bases: 3G6E|1|0|A|2103, 3G6E|1|0|A|2483, 3G6E|1|0|G|2540, 3G6E|1|0|C|2644, 3G6E|1|0|U|2645
QA status: Modified nucleotides: UR3, PSU

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3G6E|1|0|C|2098
3G6E|1|0|G|2099
3G6E|1|0|A|2100
3G6E|1|0|A|2101
3G6E|1|0|G|2102
3G6E|1|0|A|2103
3G6E|1|0|C|2104
3G6E|1|0|C|2105
*
3G6E|1|0|G|2481
3G6E|1|0|G|2482
3G6E|1|0|A|2483
3G6E|1|0|U|2484
3G6E|1|0|A|2485
3G6E|1|0|A|2486
3G6E|1|0|C|2487
3G6E|1|0|A|2488
3G6E|1|0|G|2489
*
3G6E|1|0|C|2533
3G6E|1|0|C|2534
3G6E|1|0|U|2535
3G6E|1|0|C|2536
3G6E|1|0|G|2537
3G6E|1|0|A|2538
3G6E|1|0|U|2539
3G6E|1|0|G|2540
3G6E|1|0|U|2541
3G6E|1|0|C|2542
*
3G6E|1|0|G|2617
3G6E|1|0|G|2618
3G6E|1|0|UR3|2619
3G6E|1|0|U|2620
3G6E|1|0|PSU|2621
3G6E|1|0|A|2622
3G6E|1|0|G|2623
*
3G6E|1|0|C|2641
3G6E|1|0|G|2642
3G6E|1|0|G|2643
3G6E|1|0|C|2644
3G6E|1|0|U|2645
3G6E|1|0|G|2646

Current chains

Chain 0: 23S ribosomal RNA

Nearby chains

Chain A: 50S ribosomal protein L2P
Chain B: 50S ribosomal protein L3P
Chain C: 50S ribosomal protein L4P
Chain L: 50S ribosomal protein L15P
Chain R: 50S ribosomal protein L22P

J5_3G6E_007