J5_3J6B_002
3D structure
- PDB id
- 3J6B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAGUA*UGAC*GUUU*AC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 3J6B|1|A|U|1288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3J6B_002 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.1421
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
3J6B|1|A|C|483
3J6B|1|A|A|484
3J6B|1|A|A|485
3J6B|1|A|G|486
3J6B|1|A|U|487
3J6B|1|A|A|488
*
3J6B|1|A|U|577
3J6B|1|A|G|578
3J6B|1|A|A|579
3J6B|1|A|C|580
*
3J6B|1|A|G|700
3J6B|1|A|U|701
3J6B|1|A|U|702
3J6B|1|A|U|703
*
3J6B|1|A|A|1229
3J6B|1|A|C|1230
*
3J6B|1|A|G|1283
3J6B|1|A|A|1284
3J6B|1|A|G|1285
3J6B|1|A|A|1286
3J6B|1|A|A|1287
3J6B|1|A|U|1288
3J6B|1|A|G|1289
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain 4
- 54S ribosomal protein L51, mitochondrial
- Chain D
- 54S ribosomal protein YmL6, mitochondrial
- Chain J
- 54S ribosomal protein L10, mitochondrial
- Chain N
- 54S ribosomal protein L49, mitochondrial
Coloring options: