J5_3J71_002
3D structure
- PDB id
- 3J71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AAGGAGUC*GGAC*GUUCC*GGCCGCUGC*GCAGGUGCAGAUCUU
- Length
- 41 nucleotides
- Bulged bases
- 3J71|1|5|C|2289, 3J71|1|5|G|2343, 3J71|1|5|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J71|1|5|A|1333
3J71|1|5|A|1334
3J71|1|5|G|1335
3J71|1|5|G|1336
3J71|1|5|A|1337
3J71|1|5|G|1338
3J71|1|5|U|1339
3J71|1|5|C|1340
*
3J71|1|5|G|1516
3J71|1|5|G|1517
3J71|1|5|A|1518
3J71|1|5|C|1519
*
3J71|1|5|G|1658
3J71|1|5|U|1659
3J71|1|5|U|1660
3J71|1|5|C|1661
3J71|1|5|C|1662
*
3J71|1|5|G|2287
3J71|1|5|G|2288
3J71|1|5|C|2289
3J71|1|5|C|2290
3J71|1|5|G|2291
3J71|1|5|C|2292
3J71|1|5|U|2293
3J71|1|5|G|2294
3J71|1|5|C|2295
*
3J71|1|5|G|2339
3J71|1|5|C|2340
3J71|1|5|A|2341
3J71|1|5|G|2342
3J71|1|5|G|2343
3J71|1|5|U|2344
3J71|1|5|G|2345
3J71|1|5|C|2346
3J71|1|5|A|2347
3J71|1|5|G|2348
3J71|1|5|A|2349
3J71|1|5|U|2350
3J71|1|5|C|2351
3J71|1|5|U|2352
3J71|1|5|U|2353
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- Ribosomal protein uL4
- Chain L
- Ribosomal protein eL13
- Chain Q
- Ribosomal protein eL18
- Chain a
- Ribosomal protein uL15
- Chain e
- Ribosomal protein eL32
- Chain r
- Ribosomal protein eL28
Coloring options: