J5_3J71_003
3D structure
- PDB id
- 3J71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAG*CGCAAUGAAGGUGAAG*CGAG*CGGCC*GAGCACGAG
- Length
- 38 nucleotides
- Bulged bases
- 3J71|1|5|A|1387, 3J71|1|5|A|1497, 3J71|1|5|C|1501, 3J71|1|5|G|1502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J71|1|5|C|1352
3J71|1|5|G|1353
3J71|1|5|A|1354
3J71|1|5|G|1355
*
3J71|1|5|C|1384
3J71|1|5|G|1385
3J71|1|5|C|1386
3J71|1|5|A|1387
3J71|1|5|A|1388
3J71|1|5|U|1389
3J71|1|5|G|1390
3J71|1|5|A|1391
3J71|1|5|A|1392
3J71|1|5|G|1393
3J71|1|5|G|1394
3J71|1|5|U|1395
3J71|1|5|G|1396
3J71|1|5|A|1397
3J71|1|5|A|1398
3J71|1|5|G|1399
*
3J71|1|5|C|1418
3J71|1|5|G|1419
3J71|1|5|A|1420
3J71|1|5|G|1421
*
3J71|1|5|C|1464
3J71|1|5|G|1465
3J71|1|5|G|1466
3J71|1|5|C|1467
3J71|1|5|C|1468
*
3J71|1|5|G|1496
3J71|1|5|A|1497
3J71|1|5|G|1498
3J71|1|5|C|1499
3J71|1|5|A|1500
3J71|1|5|C|1501
3J71|1|5|G|1502
3J71|1|5|A|1503
3J71|1|5|G|1504
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain C
- Ribosomal protein uL4
- Chain L
- Ribosomal protein eL13
- Chain Q
- Ribosomal protein eL18
- Chain a
- Ribosomal protein uL15
- Chain b
- Ribosomal protein eL29
- Chain i
- Ribosomal protein eL36
Coloring options: