J5_3J71_005
3D structure
- PDB id
- 3J71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AGAAGACCC*GGGAUAACUGGCUUGUG*UUUUUGAUCCUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 58 nucleotides
- Bulged bases
- 3J71|1|5|A|3908, 3J71|1|5|A|4394, 3J71|1|5|U|4436, 3J71|1|5|U|4437, 3J71|1|5|U|4450, 3J71|1|5|G|4451, 3J71|1|5|U|4452, 3J71|1|5|U|4531, 3J71|1|5|U|4555, 3J71|1|5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J71|1|5|A|3903
3J71|1|5|G|3904
3J71|1|5|A|3905
3J71|1|5|A|3906
3J71|1|5|G|3907
3J71|1|5|A|3908
3J71|1|5|C|3909
3J71|1|5|C|3910
3J71|1|5|C|3911
*
3J71|1|5|G|4391
3J71|1|5|G|4392
3J71|1|5|G|4393
3J71|1|5|A|4394
3J71|1|5|U|4395
3J71|1|5|A|4396
3J71|1|5|A|4397
3J71|1|5|C|4398
3J71|1|5|U|4399
3J71|1|5|G|4400
3J71|1|5|G|4401
3J71|1|5|C|4402
3J71|1|5|U|4403
3J71|1|5|U|4404
3J71|1|5|G|4405
3J71|1|5|U|4406
3J71|1|5|G|4407
*
3J71|1|5|U|4435
3J71|1|5|U|4436
3J71|1|5|U|4437
3J71|1|5|U|4438
3J71|1|5|U|4439
3J71|1|5|G|4440
3J71|1|5|A|4441
3J71|1|5|U|4442
3J71|1|5|C|4443
3J71|1|5|C|4444
3J71|1|5|U|4445
3J71|1|5|U|4446
3J71|1|5|C|4447
3J71|1|5|G|4448
3J71|1|5|A|4449
3J71|1|5|U|4450
3J71|1|5|G|4451
3J71|1|5|U|4452
3J71|1|5|C|4453
*
3J71|1|5|G|4528
3J71|1|5|G|4529
3J71|1|5|U|4530
3J71|1|5|U|4531
3J71|1|5|U|4532
3J71|1|5|A|4533
3J71|1|5|G|4534
*
3J71|1|5|U|4552
3J71|1|5|A|4553
3J71|1|5|G|4554
3J71|1|5|U|4555
3J71|1|5|U|4556
3J71|1|5|U|4557
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- Ribosomal protein uL12
- Chain B
- Ribosomal protein uL3
- Chain C
- Ribosomal protein uL4
- Chain I
- Ribosomal protein uL16
- Chain a
- Ribosomal protein uL15
- Chain b
- Ribosomal protein eL29
Coloring options: