J5_3J7R_014
3D structure
- PDB id
- 3J7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the translating mammalian ribosome-Sec61 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAGUCU*AGGAC*GUUC*GCC*GCAGAUC
- Length
- 26 nucleotides
- Bulged bases
- 3J7R|1|5|C|2289, 3J7R|1|5|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J7R|1|5|G|1335
3J7R|1|5|G|1336
3J7R|1|5|A|1337
3J7R|1|5|G|1338
3J7R|1|5|U|1339
3J7R|1|5|C|1340
3J7R|1|5|U|1341
*
3J7R|1|5|A|1515
3J7R|1|5|G|1516
3J7R|1|5|G|1517
3J7R|1|5|A|1518
3J7R|1|5|C|1519
*
3J7R|1|5|G|1658
3J7R|1|5|U|1659
3J7R|1|5|U|1660
3J7R|1|5|C|1661
*
3J7R|1|5|G|2288
3J7R|1|5|C|2289
3J7R|1|5|C|2290
*
3J7R|1|5|G|2345
3J7R|1|5|C|2346
3J7R|1|5|A|2347
3J7R|1|5|G|2348
3J7R|1|5|A|2349
3J7R|1|5|U|2350
3J7R|1|5|C|2351
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- Ribosomal protein uL4
- Chain L
- Ribosomal protein eL13
- Chain N
- Ribosomal protein eL15
- Chain a
- Ribosomal protein uL15
- Chain e
- Ribosomal protein eL32
- Chain r
- Ribosomal protein eL28
Coloring options: