J5_3J7R_016

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCUCGCUCCUCUCCCACUU*AUGCCGACGGGCG*CGUGCAU*ACCUCGGGCCGAUC*GACG

Length

58 nucleotides

Bulged bases

3J7R|1|S2|U|128, 3J7R|1|S2|C|129, 3J7R|1|S2|G|130, 3J7R|1|S2|C|131, 3J7R|1|S2|U|132, 3J7R|1|S2|C|133, 3J7R|1|S2|C|134, 3J7R|1|S2|U|135, 3J7R|1|S2|C|136, 3J7R|1|S2|U|137, 3J7R|1|S2|C|138, 3J7R|1|S2|C|139, 3J7R|1|S2|C|142, 3J7R|1|S2|G|183, 3J7R|1|S2|U|305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J7R|1|S2|C|125
3J7R|1|S2|G|126
3J7R|1|S2|C|127
3J7R|1|S2|U|128
3J7R|1|S2|C|129
3J7R|1|S2|G|130
3J7R|1|S2|C|131
3J7R|1|S2|U|132
3J7R|1|S2|C|133
3J7R|1|S2|C|134
3J7R|1|S2|U|135
3J7R|1|S2|C|136
3J7R|1|S2|U|137
3J7R|1|S2|C|138
3J7R|1|S2|C|139
3J7R|1|S2|C|140
3J7R|1|S2|A|141
3J7R|1|S2|C|142
3J7R|1|S2|U|143
3J7R|1|S2|U|144
*
3J7R|1|S2|A|175
3J7R|1|S2|U|176
3J7R|1|S2|G|177
3J7R|1|S2|C|178
3J7R|1|S2|C|179
3J7R|1|S2|G|180
3J7R|1|S2|A|181
3J7R|1|S2|C|182
3J7R|1|S2|G|183
3J7R|1|S2|G|184
3J7R|1|S2|G|185
3J7R|1|S2|C|186
3J7R|1|S2|G|187
*
3J7R|1|S2|C|212
3J7R|1|S2|G|213
3J7R|1|S2|U|214
3J7R|1|S2|G|215
3J7R|1|S2|C|216
3J7R|1|S2|A|217
3J7R|1|S2|U|218
*
3J7R|1|S2|A|302
3J7R|1|S2|C|303
3J7R|1|S2|C|304
3J7R|1|S2|U|305
3J7R|1|S2|C|306
3J7R|1|S2|G|307
3J7R|1|S2|G|308
3J7R|1|S2|G|309
3J7R|1|S2|C|310
3J7R|1|S2|C|311
3J7R|1|S2|G|312
3J7R|1|S2|A|313
3J7R|1|S2|U|314
3J7R|1|S2|C|315
*
3J7R|1|S2|G|335
3J7R|1|S2|A|336
3J7R|1|S2|C|337
3J7R|1|S2|G|338

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SG

Ribosomal protein eS6

Chain SI

Ribosomal protein eS8