J5_3J81_004

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AACUUUGGG*CUUUCCU*ACUUU*AUGGAAUAGGA*UAAUGAUU

Length

40 nucleotides

Bulged bases

3J81|1|2|C|696, 3J81|1|2|C|697, 3J81|1|2|A|810, 3J81|1|2|U|812, 3J81|1|2|G|814, 3J81|1|2|A|855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J81|1|2|A|634
3J81|1|2|A|635
3J81|1|2|C|636
3J81|1|2|U|637
3J81|1|2|U|638
3J81|1|2|U|639
3J81|1|2|G|640
3J81|1|2|G|641
3J81|1|2|G|642
*
3J81|1|2|C|692
3J81|1|2|U|693
3J81|1|2|U|694
3J81|1|2|U|695
3J81|1|2|C|696
3J81|1|2|C|697
3J81|1|2|U|698
*
3J81|1|2|A|740
3J81|1|2|C|741
3J81|1|2|U|742
3J81|1|2|U|743
3J81|1|2|U|744
*
3J81|1|2|A|806
3J81|1|2|U|807
3J81|1|2|G|808
3J81|1|2|G|809
3J81|1|2|A|810
3J81|1|2|A|811
3J81|1|2|U|812
3J81|1|2|A|813
3J81|1|2|G|814
3J81|1|2|G|815
3J81|1|2|A|816
*
3J81|1|2|U|853
3J81|1|2|A|854
3J81|1|2|A|855
3J81|1|2|U|856
3J81|1|2|G|857
3J81|1|2|A|858
3J81|1|2|U|859
3J81|1|2|U|860

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS7

Chain L

uS17

Chain N

uS15

Chain W

uS8