J5_3J9Y_001

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

3J9Y|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3J9Y_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0654

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3J9Y|1|A|C|47
3J9Y|1|A|G|48
3J9Y|1|A|A|49
3J9Y|1|A|U|50
3J9Y|1|A|G|51
3J9Y|1|A|A|52
3J9Y|1|A|A|53
3J9Y|1|A|G|54
*
3J9Y|1|A|C|116
3J9Y|1|A|G|117
3J9Y|1|A|A|118
3J9Y|1|A|A|119
3J9Y|1|A|U|120
3J9Y|1|A|G|121
*
3J9Y|1|A|C|130
3J9Y|1|A|A|131
*
3J9Y|1|A|U|148
3J9Y|1|A|A|149
3J9Y|1|A|U|150
*
3J9Y|1|A|A|176
3J9Y|1|A|G|177
3J9Y|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34