J5_3J9Y_005

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC

Length

37 nucleotides

Bulged bases

3J9Y|1|A|A|2062, 3J9Y|1|A|A|2448, 3J9Y|1|A|H2U|2449, 3J9Y|1|A|U|2506, 3J9Y|1|A|U|2609

QA status

Modified nucleotides: H2U, 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J9Y|1|A|G|2057
3J9Y|1|A|A|2058
3J9Y|1|A|A|2059
3J9Y|1|A|A|2060
3J9Y|1|A|G|2061
3J9Y|1|A|A|2062
3J9Y|1|A|C|2063
3J9Y|1|A|C|2064
*
3J9Y|1|A|G|2446
3J9Y|1|A|G|2447
3J9Y|1|A|A|2448
3J9Y|1|A|H2U|2449
3J9Y|1|A|A|2450
3J9Y|1|A|A|2451
3J9Y|1|A|C|2452
3J9Y|1|A|A|2453
*
3J9Y|1|A|U|2500
3J9Y|1|A|C|2501
3J9Y|1|A|G|2502
3J9Y|1|A|2MA|2503
3J9Y|1|A|PSU|2504
3J9Y|1|A|G|2505
3J9Y|1|A|U|2506
3J9Y|1|A|C|2507
*
3J9Y|1|A|G|2582
3J9Y|1|A|G|2583
3J9Y|1|A|U|2584
3J9Y|1|A|U|2585
3J9Y|1|A|U|2586
3J9Y|1|A|A|2587
3J9Y|1|A|G|2588
*
3J9Y|1|A|C|2606
3J9Y|1|A|G|2607
3J9Y|1|A|G|2608
3J9Y|1|A|U|2609
3J9Y|1|A|C|2610
3J9Y|1|A|C|2611

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L16

Chain S

50S ribosomal protein L22

Chain v

Transfer RNA; tRNA