J5_3JAG_002
3D structure
- PDB id
- 3JAG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 3JAG|1|5|C|2289, 3JAG|1|5|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3JAG_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.1609
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63811.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
3JAG|1|5|G|1335
3JAG|1|5|G|1336
3JAG|1|5|A|1337
3JAG|1|5|G|1338
3JAG|1|5|U|1339
3JAG|1|5|C|1340
*
3JAG|1|5|G|1516
3JAG|1|5|G|1517
3JAG|1|5|A|1518
3JAG|1|5|C|1519
*
3JAG|1|5|G|1658
3JAG|1|5|U|1659
3JAG|1|5|U|1660
3JAG|1|5|C|1661
*
3JAG|1|5|G|2288
3JAG|1|5|C|2289
3JAG|1|5|C|2290
*
3JAG|1|5|G|2345
3JAG|1|5|C|2346
3JAG|1|5|A|2347
3JAG|1|5|G|2348
3JAG|1|5|A|2349
3JAG|1|5|U|2350
3JAG|1|5|C|2351
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- uL4
- Chain L
- eL13
- Chain N
- eL15
- Chain a
- uL15
- Chain e
- eL32
- Chain r
- eL28
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