J5_3JAG_004
3D structure
- PDB id
- 3JAG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 3JAG|1|5|A|3908, 3JAG|1|5|A|4394, 3JAG|1|5|U|4555, 3JAG|1|5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JAG|1|5|A|3903
3JAG|1|5|G|3904
3JAG|1|5|A|3905
3JAG|1|5|A|3906
3JAG|1|5|G|3907
3JAG|1|5|A|3908
3JAG|1|5|C|3909
3JAG|1|5|C|3910
*
3JAG|1|5|G|4392
3JAG|1|5|G|4393
3JAG|1|5|A|4394
3JAG|1|5|U|4395
3JAG|1|5|A|4396
3JAG|1|5|A|4397
3JAG|1|5|C|4398
3JAG|1|5|U|4399
3JAG|1|5|G|4400
*
3JAG|1|5|C|4444
3JAG|1|5|U|4445
3JAG|1|5|U|4446
3JAG|1|5|C|4447
3JAG|1|5|G|4448
3JAG|1|5|A|4449
3JAG|1|5|U|4450
3JAG|1|5|G|4451
3JAG|1|5|U|4452
3JAG|1|5|C|4453
*
3JAG|1|5|G|4528
3JAG|1|5|G|4529
3JAG|1|5|U|4530
3JAG|1|5|U|4531
3JAG|1|5|U|4532
3JAG|1|5|A|4533
3JAG|1|5|G|4534
*
3JAG|1|5|U|4552
3JAG|1|5|A|4553
3JAG|1|5|G|4554
3JAG|1|5|U|4555
3JAG|1|5|U|4556
3JAG|1|5|U|4557
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 1
- peptide
- Chain 2
- Transfer RNA; tRNA
- Chain A
- uL2
- Chain B
- uL3
- Chain C
- uL4
- Chain a
- uL15
- Chain b
- eL29
- Chain ii
- eRF1
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