J5_3JAG_008

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UCGCCACUU*AUGCCGACGGGC*GUGCAUU*ACCUCGGGCCGAU*ACGA

Length

45 nucleotides

Bulged bases

3JAG|1|9|G|126, 3JAG|1|9|C|139, 3JAG|1|9|C|142, 3JAG|1|9|G|183, 3JAG|1|9|G|215, 3JAG|1|9|U|305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAG|1|9|U|124
3JAG|1|9|C|125
3JAG|1|9|G|126
3JAG|1|9|C|139
3JAG|1|9|C|140
3JAG|1|9|A|141
3JAG|1|9|C|142
3JAG|1|9|U|143
3JAG|1|9|U|144
*
3JAG|1|9|A|175
3JAG|1|9|U|176
3JAG|1|9|G|177
3JAG|1|9|C|178
3JAG|1|9|C|179
3JAG|1|9|G|180
3JAG|1|9|A|181
3JAG|1|9|C|182
3JAG|1|9|G|183
3JAG|1|9|G|184
3JAG|1|9|G|185
3JAG|1|9|C|186
*
3JAG|1|9|G|213
3JAG|1|9|U|214
3JAG|1|9|G|215
3JAG|1|9|C|216
3JAG|1|9|A|217
3JAG|1|9|U|218
3JAG|1|9|U|219
*
3JAG|1|9|A|302
3JAG|1|9|C|303
3JAG|1|9|C|304
3JAG|1|9|U|305
3JAG|1|9|C|306
3JAG|1|9|G|307
3JAG|1|9|G|308
3JAG|1|9|G|309
3JAG|1|9|C|310
3JAG|1|9|C|311
3JAG|1|9|G|312
3JAG|1|9|A|313
3JAG|1|9|U|314
*
3JAG|1|9|A|336
3JAG|1|9|C|337
3JAG|1|9|G|338
3JAG|1|9|A|339

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain GG

eS6

Chain II

eS8