3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
Length
40 nucleotides
Bulged bases
3JAI|1|5|A|4394, 3JAI|1|5|U|4395, 3JAI|1|5|U|4555, 3JAI|1|5|U|4556
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAI|1|5|A|3903
3JAI|1|5|G|3904
3JAI|1|5|A|3905
3JAI|1|5|A|3906
3JAI|1|5|G|3907
3JAI|1|5|A|3908
3JAI|1|5|C|3909
3JAI|1|5|C|3910
*
3JAI|1|5|G|4392
3JAI|1|5|G|4393
3JAI|1|5|A|4394
3JAI|1|5|U|4395
3JAI|1|5|A|4396
3JAI|1|5|A|4397
3JAI|1|5|C|4398
3JAI|1|5|U|4399
3JAI|1|5|G|4400
*
3JAI|1|5|C|4444
3JAI|1|5|U|4445
3JAI|1|5|U|4446
3JAI|1|5|C|4447
3JAI|1|5|G|4448
3JAI|1|5|A|4449
3JAI|1|5|U|4450
3JAI|1|5|G|4451
3JAI|1|5|U|4452
3JAI|1|5|C|4453
*
3JAI|1|5|G|4528
3JAI|1|5|G|4529
3JAI|1|5|U|4530
3JAI|1|5|U|4531
3JAI|1|5|U|4532
3JAI|1|5|A|4533
3JAI|1|5|G|4534
*
3JAI|1|5|U|4552
3JAI|1|5|A|4553
3JAI|1|5|G|4554
3JAI|1|5|U|4555
3JAI|1|5|U|4556
3JAI|1|5|U|4557

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 1
peptide
Chain 2
Transfer RNA; tRNA
Chain A
uL2
Chain B
uL3
Chain C
uL4
Chain a
uL15
Chain b
eL29
Chain ii
eRF1

Coloring options:

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